Indiana University

Dr. Jerome R. Busemeyer
Dr. Brian F. O'Donnell
Dr. Joshua W. Brown
Dr. Julie C. Stout
Dr. John K. Kruschke


R related

RStudio: My favorite R editor (free cross-platform!)
Help for R: A website with lots of useful R references (maintained by Jonathan Baron).
R Graph Gallery: I sometimes browse galleries to see what R can plot..
ggplot2: Nice R package for advanced graphics
xtable: Generating tables in LaTeX often takes time and is cumbersome.
           Xtable generates LaTeX (or HTML) codes from a table or an array in R.
Quick-R: Personal website with useful information for people interested in R.


MATLAB related

MATLAB central: Often quite helpful


LaTeX related

Texmaker: my favorite LaTeX editor (free cross-platform!)
JabRef: Convenient BibTeX editor that can directly import entries from PubMed.
TeXMed: To export PubMed citations into BibTeX.
Beamer tutorials: 1. a very comprehensive one, 2. this one is focused on animation effects (or overlays).
LaTeXiT: To use LaTeX equations in Keynote and MS Powerpoint in Mac OS X (free).
Aurora: To use LaTeX in MS Powerpoint (for presentation) and Word (Windows only).
            It is also useful when you need to convert a TeX document into a word file.
            Also check out TeXPoint. Neither are free though.
TeXcount: Counting words in LaTeX documents


WinBUGS related

MATBUGS: MATLAB interface to WinBUGS
WinBUGS book: Lots of nice WinBUGS examples (written by Michael Lee and EJ Wagenmakers)
WBDev tutorial: Working tutorial (by Ruud Wetzels) how to run WinBUGS Development Interface
R2WinBUGS on Mac OS X via wine: Using R2WinBUGS, it's possible to do all BUGS from R. This guide worked out for my Macbook Pro, Mac OS X 10.6.6, Wine ver 1.3.11 (most recent version as of Jan 2011). This guide (the older and harder way) was helpful for installing DCOM98, which was necessary to run R2WinBUGS 'smoothly' on my Mac. I didn't create or modify the ~/.Renviron file, but entered the following directly into the 'bugs' command:

WINE="/opt/local/bin/wine"
WINEPATH="/opt/local/bin/winepath"
bugs.directory="/Users/MY_USER_NAME/.wine/drive_c/Program Files/WinBUGS14"  

Here are some more tutorials how to run R2WinBUGS on Mac using Darwine (site1, site2) or WineBottler.


Miscellaneous

Google-Sites How-tos: Useful tips for google-sites.
Google-site web pages: List of web pages developed with Google-Sites.